WebResults: We tested CMsearch on two challenging tasks, protein homology detection and protein structure prediction, by querying all 8332 PDB40 proteins. Our results demonstrate that CMsearch is insensitive to the similarity metrics used to define the sequence and the structure spaces. By using HMM–HMM alignment as the sequence similarity ... WebRun cmsearch on pfur.fa using your "my.cm" model. Deliverable #1: send me the output of cmsearch above, together with the bit scores and E-values of the best scoring true tRNA and worst scoring false tRNA (true/false according to the Genbank annotation). How do the bit scores compare to the "rule of thumb" for significance given in the ...
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cmsearch: Search for Covariance Models (CM) in a set of sequences. in
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